PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G15890.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1357aa    MW: 152935 Da    PI: 6.0858
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G15890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.7e-1874158186
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      f+kv tpsdv+++grlv+p ++ae +       +++e++ l++ed  g+ W++ +  r++s    lt GW++F + n+L++gD+v F++  
  ONIVA11G15890.1  74 FDKVVTPSDVGNLGRLVIPWQHAECYfprdvPANEREGVVLRFEDDAGKPWRFLY--RGSS----LTLGWSHFFRKNRLDAGDMVSFYRGA 158
                      89*********************888***99778899******************..9999....***********************543 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-2665170IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.5E-2171160IPR015300DNA-binding pseudobarrel domain
CDDcd100179.27E-1672156No hitNo description
SMARTSM010191.6E-974170IPR003340B3 DNA binding domain
PfamPF023626.9E-1574160IPR003340B3 DNA binding domain
PROSITE profilePS5086311.05374172IPR003340B3 DNA binding domain
Gene3DG3DSA:3.80.10.108.7E-26353531IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520582.75E-28356527IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF525404.64E-38543798IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3004.5E-4571626IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009314.7E-33574826IPR002182NB-ARC
PRINTSPR003642.3E-8578593No hitNo description
PRINTSPR003642.3E-8648662No hitNo description
PRINTSPR003642.3E-8745759No hitNo description
SuperFamilySSF520585.61E-358611084IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.107.5E-149401070IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520585.61E-3511241336IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.6E-1011281336IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003642.3E-813021318No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1357 aa     Download sequence    Send to blast
MEPGSSSREG EQQEPANERL TATGGGGGGG GGSPVSDQEL SDGEEVSDGE YQAGDDFSGY  60
AVRGRGFVEK EHIFDKVVTP SDVGNLGRLV IPWQHAECYF PRDVPANERE GVVLRFEDDA  120
GKPWRFLYRG SSLTLGWSHF FRKNRLDAGD MVSFYRGASE ATRDRLFIHS KRRMHILPTL  180
GYSDPQVHIN RLFQLLVRVR TMVSSFGKSG SPSPPNSPLP TVQNFTYKAL KDCLQDLHYY  240
SLLSMMGRNH KSQSTSAKIR DTIPTLDALI QLRSLSDPVF RIPAAATSHC ILLCRGVLGI  300
MGFLCSDENM KEDHRMLQVP AFDDLNYSAQ VKITRMKEQT MPSSLADPIY LLPTAIRNLL  360
YLDLSNCSDI VQLPPSLGSS LHMLSALNLS CCYSLRALPD SLVCLYDLQI LLLSFCHNLQ  420
NLPVSFGDLS NLRLLDLSGC RSLRLFPSSF VNLGSLENLN LSDCIRLMGI PQNFEDLQKL  480
EYLNFAGCYR VDLPVYCLTN LVNLKCLTLS NHTDIKDFPY SFTDLKRHLY LSRWWKYNRV  540
HTQCNLKSYR CHQQRIINSL LSDGSDEGDI TSEQSLTSIC IFGESGTGKT ELLHEIYNDQ  600
KILEGFHLRI WINMCDKKRL LEKIIEFTAC AYCYDAPSSI LEETVREELN GKRFLLVLND  660
ADIENQCFWT DVWKVSNVGA AGSALIVTTR SKEVASLFGA MKPYYMNPLS KEECFMVFQE  720
HAGCGFDINN DHELTKVGWK IVEKCGGNLL CMKALSGLLW HSETALSEID SLVGGIVPAL  780
RLCYDLLPSH LKQCFKFCSL FPKDYVFVKH HIIQLWISQG FVYPEEDSQP EDTGLQYFNE  840
FLCRSFFQHC PFSNDHEDKF VMHELFHDLA CSVSKDESFS SEEPFFSLPE NICHLSLVIS  900
DSNTVVLTKE HRHLQSLMVV RRSATEYSSS FVPLLKILGL NDLLMKCGFL RALNLSCTTI  960
VDLPGSIGRM KHLRFLAMNN TKIKSLPTEI GQLNTLQTLE LKDCCCLIEL PESTKNLMKL  1020
RHLDVQKEPG NIHVGMPSGL GQLTDLQTLT VFNIGDDLSH CSIRDLKNLS GLRGHVHITG  1080
LQNITAGDDA KEANLVGKQF LQALTLEWCC SSEEMEDESD KEIANQVLQN LQPNTSIQEL  1140
AIQNYPGNSF PNWIKDSGLC MLVSITIDNS QDCNEIPYLG DLPCLKFLFI QKMYAVENFG  1200
QRSNSLTTDG KHAPGFPSLE ILNLWEMYSL QFWNGTRYGD FPQLRGLSIS RCPKLSNLPP  1260
LISLLYLSFH CGDQLPTLSE FPSLKSLKIE GFQKLKSVSF CPEMPLLQKL EISDCKELVS  1320
IDAPLLSVSN LKVVRCPKLH FGGSWLEGCL MWEEFKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-207117311117DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12232TGGGGGGGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2890240.0AK289024.1 Oryza sativa Japonica Group cDNA, clone: J090090I16, full insert sequence.
GenBankAK3185810.0AK318581.1 Oryza sativa Japonica Group cDNA, clone: J090090I16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644837.10.0PREDICTED: uncharacterized protein LOC4342906 isoform X1
TrEMBLA0A0E0J2W60.0A0A0E0J2W6_ORYNI; Uncharacterized protein
STRINGLOC_Os07g17230.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125771216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-29B3 family protein